PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025579m
Common NameCICLE_v10025376mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 454aa    MW: 50350.4 Da    PI: 8.2524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025579mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-1781171199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k +++s+v +  ++ lp  f+++h  +  +++ ++ledesg +++ k+  +k++    l++GW++F  a++L egD++vF+l+     +l+v
  Ciclev10025579m  81 FAKSMVRSHVASCFWMGLPGYFCKSHLPD--KDTSVVLEDESGIQYTAKYFAEKTG----LSAGWRQFSTAHNLVEGDVLVFQLIA--PLKLKV 166
                      889***********************544..4567***************555555....***********************997..777899 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       ++r+
  Ciclev10025579m 167 YIIRA 171
                      99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-2073172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2274172IPR015300DNA-binding pseudobarrel domain
CDDcd100175.01E-2579170No hitNo description
PfamPF023624.1E-1581171IPR003340B3 DNA binding domain
PROSITE profilePS5086312.57681172IPR003340B3 DNA binding domain
SMARTSM010195.3E-1881172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MKPSKKKGKI ILKLKKSPPD TSVTSVPGTV EPDSRGGGKT KSSKKNKDVV DGKCSPVEPK  60
SPAMIRAEEV QSNLEPQFPS FAKSMVRSHV ASCFWMGLPG YFCKSHLPDK DTSVVLEDES  120
GIQYTAKYFA EKTGLSAGWR QFSTAHNLVE GDVLVFQLIA PLKLKVYIIR ANDFTEVDGA  180
LGLLNLDAPS KQNDTAELEI DNGEPIVVTN QNTKKKRKKS LPLAVVQKKN KKSVQGRSAS  240
NLGQPAEQSE NDSEEVGSEV LEGFKISTPP VQFKDVTSLD NFNILVDGLV VDSELPEDIR  300
CNYYKLCCSQ NAFLHENLAQ GINFKLIVGT ISEIVNIADA LRACKFTTSR DEFAMWDKTL  360
KAFELLGMSV GFLRARLRRL QRLAFESEGA EDTRRYIEAK AQQSQTQDEI RNIEARLVEL  420
KGAWQRFDAE ISSLKSSAES YELKFREVAN APW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.89450.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425870.10.0hypothetical protein CICLE_v10025376mg
RefseqXP_006466621.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLV4SJT60.0V4SJT6_9R
STRINGPOPTR_0007s11170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-36B3 family protein